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Efficient recognition of protein fold at low sequence identity by conservative application of Psi-BLAST: validation.protein homology

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Efficient recognition of protein fold at low sequence identity by conservative application of Psi-BLAST: application (p 150-157)

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Gapped BLAST and PSI-BLASTThe BLAST programs are widely used tools for searching protein and DNA databases for sequence similarities. For protein comparisons

BLAST (Basic Local Alignment Search Tool) BLAST (Stand-alone) E-Utilities [2/10 Methodology in clinical reasoning]. [Article in French] Psiuk T

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Results of PSI-BLAST search in nr85sMaster-slave alignment(slide right to 1 2.000e-20 gi|495572698|ref|WP_008297277.1| primosomal protein N` [

using HMMER2 and an E value threshold of 0.1; further homologues were detected using reciprocal PSI-BLAST searches and an E value threshold of 0.01 (

the most common one being Q 3 [18], which In this paper, we also physicochemical features [2], PSI-BLAST profiles [3] and function

A protein structural classes prediction method based on PSI-BLAST profile.Feature selectionSupport vector machinePosition-specific scoring matrix

Results of PSI-BLAST search in nr85sMaster-slave alignment(slide right to 15 2.000e-31 gi|445983478|ref|WP_000061333.1| major pilus subunit

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these crystal structures achieve atomic resolution (better than 1.2 Å). PSI-BLAST [43] for detection of similar sequences and protein family

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Results of PSI-BLAST search in nr85sMaster-slave alignment(slide right to 2 2.000e-21 gi|663279691|ref|XP_008497961.1| PREDICTED: pleckstrin

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Prediction of cis / trans isomerization in proteins using PSI-BLAST profiles and secondary structure informationBiochemical Research Methods

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